/*    Copyright 2010 Tobias Marschall
 *
 *    This file is part of MoSDi.
 *
 *    MoSDi is free software: you can redistribute it and/or modify
 *    it under the terms of the GNU General Public License as published by
 *    the Free Software Foundation, either version 3 of the License, or
 *    (at your option) any later version.
 *
 *    MoSDi is distributed in the hope that it will be useful,
 *    but WITHOUT ANY WARRANTY; without even the implied warranty of
 *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *    GNU General Public License for more details.
 *
 *    You should have received a copy of the GNU General Public License
 *    along with MoSDi.  If not, see <http://www.gnu.org/licenses/>.
 */

package mosdi.tests;

import mosdi.fa.Alphabet;
import mosdi.util.Iupac;
import junit.framework.TestCase;

public class IupacTest extends TestCase {
	
	public void testReverse() {
		String s = "ABCDGHKMNRSTVWY";
		String complement = "RWBASYNKMDCHGVT";
		assertEquals(complement, Iupac.reverseComplementary(s));
		Alphabet a = Alphabet.getIupacAlphabet();
		assertEquals(complement, a.buildString(Iupac.reverseComplementary(a.buildIndexArray(s))));
	}

}
